Available software
| Name | Version | Hosts | Location | Maintainer |
|---|---|---|---|---|
| amber (with ambertools) |
18 | all | /opt/apps/amber18/* |
KK-SDH |
| amber (with ambertools) |
20 | all | /opt/apps/amber20/* |
KK-SDH |
| blast-legacy | 2.2.9 | all | /opt/apps/blast-legacy/bin/* |
KK-SDH |
| cd-hit | 4.8.1 | all | /opt/apps/cd-hit |
KK-SDH |
| ccmpred | 688e4ba | all | /opt/apps/CCMpred/bin/ccmpred |
KK-SDH |
| clustalomega | 1.2.4 | all | /opt/apps/clustalo/clustalo-1.2.4 |
KK-SDH |
| dorado | 0.3.3 | all | /opt/apps/dorado-0.3.3-linux-x64/bin/ |
KK-SDH |
| dssp | 3.1.4 | all | /opt/apps/dssp-3.1.4/mkdssp Binary erroneously shows version 3.1.2 |
KK-SDH |
| dssp | 2.3.0 | all | /opt/apps/dssp-2.3.0/mkdssp This version works with Socket |
KK-SDH |
| hh-suite | 3.3.0 | all | /opt/apps/hh-suite/bin/* |
KK-SDH |
| hmmer | 3.3.2 | all | /opt/apps/hmmer-3.3.2/* |
KK-SDH |
| mafft | 7.490 | all | /opt/apps/mafft/bin/* |
KK-SDH |
| master | 1.5.1 | all | /opt/apps/master/bin/* |
KK-SDH |
| maxcluster | 0.6.6 | all | /opt/apps//maxcluster/maxcluster64bit |
KK-SDH |
| mmseqs2 | 9-d36de | all | /opt/apps/MMseqs2/bin/* |
KK-SDH |
| modeller | 9.2.5 | all | mod9.25 (in $PATH) |
SDH |
| muscle | 3.8.31 | all | /opt/apps/muscle/muscle3.8.31 |
KK-SDH |
| ncbi-blast | 2.9.0 | all | /opt/apps/ncbi-blast+/bin/* |
KK-SDH |
| ont-guppy | 6.0.1+652ffd1 | edi0[1-8] |
/opt/apps/ont-guppy/bin/* |
KK-SDH |
| pd2_public | 5b84579 | all | /opt/apps/pd2_public |
KK-SDH |
| pymol | 2.3.0 | all | /opt/apps/pymol/bin/pymol |
KK-SDH |
| raxml | 1.2.0 | all | /opt/apps/raxmlng-1.2.0/bin/ |
KK-SDH |
| rosetta | 3.10 | all | /opt/apps/rosetta-3.10/main/source/bin/* |
KK-SDH |
| rosetta | 3.12 | all | /opt/apps/rosetta-3.12/main/source/bin/* |
KK-SDH |
| socket | 3.03 | all | /opt/apps/socket/socket |
KK-SDH |
| socket2 | all | all | /opt/apps/socket2/socket2 Binary erroneously shows version 3.02 |
KK-SDH |