localpdb.PDB.entries
localpdb.PDB.entries
| Column | Description |
|---|---|
type |
Type of entry (prot, prot-nuc) |
method |
Method of structure determination (diffraction, EM, NMR) |
resolution |
Resolution (available for methods: diffraction, EM) |
deposition_date |
Date of deposition to PDB |
pdb_fn |
Filename of the structure in the PDB format (if structure mirror is available) |
mmCIF_fn |
Filename of the structure in the mmCIF format (if structure mirror is available) |
biounit |
Filename of the biological assembly generated with the MakeMultimer.py script (requires Biounit plugin) |
socket_7.* |
Filename of the Socket (program detecting coiled-coil domains) output Biounit and Socket plugins) |
dssp |
Filename of the DSSP file (requires DSSP plugin) |
Warning
- Some large protein structures will not be available in the PDB format - in such case there'll be an
np.nanvalue in thepdb_fncolumn. - Currently, entries containing solely the nucleic acids are not shown in the
lpdb.entries
Example
lpdb.entries
| type | method | resolution | deposition_date | pdb_fn | |
|---|---|---|---|---|---|
| 4fd7 | prot | diffraction | 1.8 | 2012-05-26 00:00:00 | /ssd/db/localpdb/mirror/pdb/fd/pdb4fd7.ent.gz |
| 6gz5 | prot-nuc | EM | 3.5 | 2018-07-03 00:00:00 | not_compatible |
| 6efv | prot | diffraction | 2.341 | 2018-08-17 00:00:00 | /ssd/db/localpdb/mirror/pdb/ef/pdb6efv.ent.gz |
| 3eqb | prot | diffraction | 2.62 | 2008-09-30 00:00:00 | /ssd/db/localpdb/mirror/pdb/eq/pdb3eqb.ent.gz |
| 3lq4 | prot | diffraction | 1.98 | 2010-02-08 00:00:00 | /ssd/db/localpdb/mirror/pdb/lq/pdb3lq4.ent.gz |
| ... | ... | ... | ... | ... | ... |